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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011143.1_4822_5488_F

Intron Information:

Intron Rank:
140312
Intron Class:
major
Intron Phase:
Intron Coordinates:
4822 - 5488
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCCTC
5'SS Class:
major
3'SS Sequence:
TCTTCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATTCCCATACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
63.5
42.9
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
84
0.77
0.7
76.7
31.9
Minor 5ss
37.5
-1.4
3.2
51.7
45
Minor BPS
48.5
-0.1
2
66.03
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025481
Chromosome:
PEDO01011143.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029925
3864 - 5978
2115