Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011168.1_2391_3167_R

Intron Information:

Intron Rank:

144576

Intron Class:

major

Intron Phase:

Intron Coordinates:

2391 - 3167

Intron Length:

777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGAGCCT

5'SS Class:

major

3'SS Sequence:

TTCTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAA

U12 Branch Point Sequence:

ACCACCCTGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.7

0.46

1.1

60.3

44.2

Major BPS

59.7

0.24

1.2

52.7

43.2

Major PPT

86.5

0.82

0.7

81.4

23.6

Minor 5ss

31.4

-2.1

3.7

47.9

47.8

Minor BPS

51.8

0.14

1.8

67.07

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025110

Chromosome:

PEDO01011168.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044049

2302 - 3861

1560

ENSAPLT00000038418

1391 - 3861

2471