Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011168.1_3530_3615_R

Intron Information:

Intron Rank:

144578

Intron Class:

major

Intron Phase:

Intron Coordinates:

3530 - 3615

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTACGCACG

5'SS Class:

major

3'SS Sequence:

TGTCTGACCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

GCTTTTTCACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.2

0.41

1.2

59.4

45.2

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

70.3

0.46

0.9

66.6

39.3

Minor 5ss

41.1

-1

3.1

43.2

Minor BPS

49.4

0.03

1.8

67.87

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025110

Chromosome:

PEDO01011168.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041198

1330 - 3861

2532

ENSAPLT00000038418

1391 - 3861

2471