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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011168.1_3530_3727_R

Intron Information:

Intron Rank:
144584
Intron Class:
major
Intron Phase:
Intron Coordinates:
3530 - 3727
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAAGC
5'SS Class:
major
3'SS Sequence:
TGTCTGACCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GCTTTTTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
66.3
39.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.3
0.46
0.9
66.6
39.3
Minor 5ss
28.9
-2.4
2.8
35.8
40.7
Minor BPS
49.4
0.03
1.8
67.87
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025110
Chromosome:
PEDO01011168.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044049
2302 - 3861
1560