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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_140570_141277_R

Intron Information:

Intron Rank:
140526
Intron Class:
major
Intron Phase:
Intron Coordinates:
140570 - 141277
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTCTTCTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.4
0.75
0.7
80.4
24.9
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
47
-0.1
2
69.07
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022976
Chromosome:
PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035135
139819 - 142322
2504