Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_143287_143763_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

143287 - 143763

Intron Length:

477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAATCTG

5'SS Class:

major

3'SS Sequence:

GGGACATGGACAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

TTCAGCTCAATT

Flanking Amino Acid:

RREEAHITCNERPQVAACPN

Intron Amino Acid Position:

662

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

67.8

43.1

Major BPS

0.65

1.5

85.7

34.9

Major PPT

48.3

-0.1

1.2

38.5

43.6

Minor 5ss

37.3

-1.4

3.1

46.6

43.1

Minor BPS

51.1

0.11

72.72

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029751

Chromosome:

PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042963

142343 - 147498

5156