Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_145136_145243_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

145136 - 145243

Intron Length:

108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTGCTCTCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATCAA

U12 Branch Point Sequence:

TCTGCTCTCACC

Flanking Amino Acid:

QENAAAVICSGPAHHMSVRL

Intron Amino Acid Position:

376

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.7

26.7

Major BPS

57.7

0.19

1.1

Major PPT

0.45

0.9

62.8

38.4

Minor 5ss

29.9

-2.3

3.2

41.3

45.2

Minor BPS

47.1

-0.2

2.1

62.23

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029751

Chromosome:

PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042963

142343 - 147498

5156