Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_18138_22139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18138 - 22139

Intron Length:

4002

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCACC

5'SS Class:

major

3'SS Sequence:

TTCTGTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTCAT

U12 Branch Point Sequence:

CTGTGTGTCATG

Flanking Amino Acid:

QVYDYRERRARVVLGPELVV

Intron Amino Acid Position:

585

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

66.2

39.6

Major BPS

67.1

0.42

1.4

71.4

45.1

Major PPT

81.7

0.71

0.9

76.2

37.8

Minor 5ss

35.7

-1.6

2.9

45.4

42.5

Minor BPS

36.4

-1.2

2.5

41.43

44.7

Associated Gene:

Gene:

MVP

Ensembl Gene ID:

ENSAPLG00000010706

Chromosome:

PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043539

9375 - 25665

16291

ENSAPLT00000011147

9375 - 25831

16457