Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_25345_25687_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25345 - 25687

Intron Length:

343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

TGCCCATCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAT

U12 Branch Point Sequence:

ATGACCAGCACT

Flanking Amino Acid:

DIARAGPELQVKLLQGLGLQ

Intron Amino Acid Position:

913

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

77.8

38.7

Major BPS

57.1

0.18

1.4

66.4

42.2

Major PPT

72.1

0.5

0.9

62.2

38.9

Minor 5ss

29.7

-2.3

2.6

33.4

41.8

Minor BPS

44.3

-0.3

2.1

65.36

44.5

Associated Gene:

Gene:

MVP

Ensembl Gene ID:

ENSAPLG00000010706

Chromosome:

PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011147

9375 - 25831

16457