Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_36365_39491_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36365 - 39491

Intron Length:

3127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

GATCATCTAACA

Flanking Amino Acid:

KLMRDAKIYQIYEGTAQIQR

Intron Amino Acid Position:

401

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.9

1.13

0.6

92.3

16.1

Major BPS

73.1

0.58

79.6

29.1

Major PPT

93.1

0.97

0.6

18.6

Minor 5ss

-1.7

2.7

41.8

44.8

Minor BPS

48.3

-0.1

1.8

61.14

37.9

Associated Gene:

Gene:

ACADM

Ensembl Gene ID:

ENSAPLG00000010729

Chromosome:

PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028207

35812 - 46750

10939

ENSAPLT00000025529

35812 - 49609

13798