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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_39741_40381_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39741 - 40381
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCATCATTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATCATT
Flanking Amino Acid:
RKTFGKVIAEHQAVSFMLAE
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70.8
0.47
0.9
65.3
34.9
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
53
0.18
2
77.53
39.1

Associated Gene:

Gene:
ACADM
Ensembl Gene ID:
ENSAPLG00000010729
Chromosome:
PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025529
35812 - 49609
13798
ENSAPLT00000011196
37050 - 49609
12560
ENSAPLT00000028207
35812 - 46750
10939