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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_40478_40554_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40478 - 40554
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
GTATTTAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTATTTAATT
Flanking Amino Acid:
MGAFDKTRPPVAAGAVGLAK
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.8
0.54
1
71.3
43
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
65
0.55
1.5
76.19
41.2

Associated Gene:

Gene:
ACADM
Ensembl Gene ID:
ENSAPLG00000010729
Chromosome:
PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025529
35812 - 49609
13798
ENSAPLT00000011196
37050 - 49609
12560
ENSAPLT00000028207
35812 - 46750
10939