Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_40696_41496_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40696 - 41496

Intron Length:

801

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATCAA

U12 Branch Point Sequence:

ACCTCCGTAAAT

Flanking Amino Acid:

DSPGIQIGRKEMNMGQRCSD

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

77.3

32.6

Major BPS

62.4

0.31

32.1

Major PPT

93.6

0.98

0.6

92.4

17.8

Minor 5ss

30.9

-2.2

3.2

46.4

Minor BPS

53.2

0.18

2.1

71.23

45.5

Associated Gene:

Gene:

ACADM

Ensembl Gene ID:

ENSAPLG00000010729

Chromosome:

PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011196

37050 - 49609

12560

ENSAPLT00000028207

35812 - 46750

10939

ENSAPLT00000025529

35812 - 49609

13798