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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_42936_44598_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42936 - 44598
Intron Length:
1663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TATTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTCAATA
Flanking Amino Acid:
GRMTEEPMMCAYCVTEPGAG
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
80.1
34.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.7
0.85
0.7
81.5
35.9
Minor 5ss
41.3
-1
2.8
52.2
44.4
Minor BPS
79.9
0.93
1.4
87.86
29.7

Associated Gene:

Gene:
ACADM
Ensembl Gene ID:
ENSAPLG00000010729
Chromosome:
PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025529
35812 - 49609
13798
ENSAPLT00000011196
37050 - 49609
12560
ENSAPLT00000028207
35812 - 46750
10939