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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_44680_44765_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44680 - 44765
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AATAGTATAAAT
Flanking Amino Acid:
QTAIEANSLGQMPVIIAGNE
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
44.4
-0.3
2
62.83
40.7

Associated Gene:

Gene:
ACADM
Ensembl Gene ID:
ENSAPLG00000010729
Chromosome:
PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025529
35812 - 49609
13798
ENSAPLT00000011196
37050 - 49609
12560
ENSAPLT00000028207
35812 - 46750
10939