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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_46334_46617_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46334 - 46617
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTTATAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAATA
Flanking Amino Acid:
TGKLGAGFSFELTDEQKEFQ
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.5
39.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.9
0.69
0.9
78.8
33.1
Minor 5ss
39.4
-1.2
3.1
54.6
42.8
Minor BPS
67.5
0.55
1.5
79.43
30.3

Associated Gene:

Gene:
ACADM
Ensembl Gene ID:
ENSAPLG00000010729
Chromosome:
PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011196
37050 - 49609
12560
ENSAPLT00000028207
35812 - 46750
10939
ENSAPLT00000025529
35812 - 49609
13798