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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011179.1_68362_68424_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
68362 - 68424
Intron Length:
63

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAACTCT
5'SS Class:
major
3'SS Sequence:
CACCCTCCCAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATTTTCTGAATG
Flanking Amino Acid:
LSLNFTVVSAGHLLSHSVAH
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
61.7
39.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
56.3
0.14
1
55.2
27.7
Minor 5ss
40
-1.1
3.1
48
47.6
Minor BPS
67
0.4
1.4
70.32
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022242
Chromosome:
PEDO01011179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031730
63782 - 68702
4921