Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_10186_10308_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10186 - 10308

Intron Length:

123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGGC

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

GCTTCCCCAACT

Flanking Amino Acid:

GGLDRFYFLEAYNAKTKSFE

Intron Amino Acid Position:

862

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

67.9

37.4

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

78.3

0.64

0.7

69.9

Minor 5ss

24.1

-3

3.3

42.8

Minor BPS

58.7

0.35

1.9

78.17

43.6

Associated Gene:

Gene:

DNMT1

Ensembl Gene ID:

ENSAPLG00000002534

Chromosome:

PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002615

714 - 14322

13609