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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_11793_12018_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11793 - 12018
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CGTTGCTCAGGA
Flanking Amino Acid:
GYQCTFGVLQAGQYGVAQTR
Intron Amino Acid Position:
1079

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
80.2
0.68
0.7
72.2
32.4
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
40.9
-0.7
2.3
52.02
45.8

Associated Gene:

Gene:
DNMT1
Ensembl Gene ID:
ENSAPLG00000002534
Chromosome:
PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002615
714 - 14322
13609