Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_13741_13828_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13741 - 13828

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

TTTTTTTCAGCT

Flanking Amino Acid:

VTNPEPMGKQGRVLHPEQHR

Intron Amino Acid Position:

1314

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

71.2

34.2

Major BPS

0.65

1.5

85.7

34.9

Major PPT

75.4

0.57

0.9

69.7

36.7

Minor 5ss

27.1

-2.6

3.2

41.6

Minor BPS

61.5

0.44

1.7

83.64

37.6

Associated Gene:

Gene:

DNMT1

Ensembl Gene ID:

ENSAPLG00000002534

Chromosome:

PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002615

714 - 14322

13609