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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_1413_1517_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1413 - 1517
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
CCACGCTGATCC
Flanking Amino Acid:
AKLRCEELSEERYLAKVKAL
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
79.1
0.65
0.7
72.8
25.4
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
41
-0.7
2
45.27
42.9

Associated Gene:

Gene:
DNMT1
Ensembl Gene ID:
ENSAPLG00000002534
Chromosome:
PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002615
714 - 14322
13609