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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_16628_16728_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16628 - 16728
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAACAC
5'SS Class:
major
3'SS Sequence:
TTTTTGCCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTAGGC
Flanking Amino Acid:
STGEKEKLPGEPEPVQAQQS
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.48
1.1
59.5
39.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.5
0.73
0.8
77.6
31.2
Minor 5ss
30.5
-2.2
3.3
41.8
45
Minor BPS
47.7
-0.1
2.1
63.91
41.5

Associated Gene:

Gene:
EIF3G
Ensembl Gene ID:
ENSAPLG00000025742
Chromosome:
PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042819
15161 - 17392
2232