Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_20094_20179_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20094 - 20179

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTGAGTGGC

5'SS Class:

major

3'SS Sequence:

TTCTCCCCGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAG

U12 Branch Point Sequence:

GGTGCCTGGAGC

Flanking Amino Acid:

AQGNVLFHSFIHKTEEEVQE

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

60.7

38.7

Major BPS

43.9

-0.3

1.6

36.8

44.4

Major PPT

73.5

0.53

0.9

69.9

30.9

Minor 5ss

29.8

-2.3

3.2

40.1

Minor BPS

46.7

-0.2

1.9

56.05

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025323

Chromosome:

PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038202

18191 - 21557

3367