About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_20653_20738_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20653 - 20738
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
CCTCGCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CCTCGCTCACCT
Flanking Amino Acid:
AETQLLDFRHYSVKVVPVGV
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
61.8
42.8
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
68.7
0.42
0.8
61.3
29.1
Minor 5ss
41.6
-0.9
2.8
51.9
39.7
Minor BPS
43.8
-0.3
2.2
61.08
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025323
Chromosome:
PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038202
18191 - 21557
3367