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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_3440_3542_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3440 - 3542
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CCGTCTCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TCCGTCTCCACC
Flanking Amino Acid:
DLPQHKVTSFSVYDKRGHLC
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
84.7
28.3
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
66.7
0.38
0.9
59
37
Minor 5ss
37.2
-1.4
3.5
55
49.2
Minor BPS
44.7
-0.4
2
53.1
45.1

Associated Gene:

Gene:
DNMT1
Ensembl Gene ID:
ENSAPLG00000002534
Chromosome:
PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002615
714 - 14322
13609