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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_4873_5151_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4873 - 5151
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
ACCTTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CGGCTCTCACCT
Flanking Amino Acid:
IKLAGVTLGKRRAVRRQAIR
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
72.7
0.56
1
75
30.1
Major PPT
68.6
0.42
0.9
61.7
34.3
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
45.4
-0.2
1.8
57.75
45

Associated Gene:

Gene:
DNMT1
Ensembl Gene ID:
ENSAPLG00000002534
Chromosome:
PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002615
714 - 14322
13609