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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_6129_6213_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6129 - 6213
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CGTGCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTCTCCACGACC
Flanking Amino Acid:
RISWVGEPVKSDGKKDYYQR
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
69.7
0.44
0.9
65.6
36.1
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
49.3
-0
1.9
63.07
42.7

Associated Gene:

Gene:
DNMT1
Ensembl Gene ID:
ENSAPLG00000002534
Chromosome:
PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002615
714 - 14322
13609