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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011199.1_813_1304_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
813 - 1304
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCCCAC
U12 Branch Point Sequence:
CCCGGCCCACGC
Flanking Amino Acid:
ERDEESLSEKESVQEKLSLI
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
41.9
-0.5
1.3
43.8
40.8
Major PPT
71.7
0.49
0.8
65.3
30.5
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
26.5
-1.8
2
25.84
36.9

Associated Gene:

Gene:
DNMT1
Ensembl Gene ID:
ENSAPLG00000002534
Chromosome:
PEDO01011199.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002615
714 - 14322
13609