Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011204.1_1399_1673_R

Intron Information:

Intron Rank:

129271

Intron Class:

major

Intron Phase:

Intron Coordinates:

1399 - 1673

Intron Length:

275

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTCAA

5'SS Class:

major

3'SS Sequence:

TTGTTGTCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

CTATTCTAAAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.2

38.6

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

83.6

0.76

0.9

81.3

36.4

Minor 5ss

-1.6

2.6

41.5

44.9

Minor BPS

52.8

0.17

71.66

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016759

Chromosome:

PEDO01011204.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025195

43 - 1841

1799