Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011258.1_809_1088_R

Intron Information:

Intron Rank:

129613

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

809 - 1088

Intron Length:

280

Sequence Information:

Terminal Dinucleotides:

GT-TG

5'SS Sequence:

CCG|GTAACGCTT

5'SS Class:

major

3'SS Sequence:

TGGGGGGTCTCTG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCAGGAG

U12 Branch Point Sequence:

GGGGCCAGGAGG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.1

0.43

1.2

64.7

46.6

Major BPS

34.6

-0.9

1.5

22.7

32.9

Major PPT

34.7

-0.8

3.1

42.1

47.3

Minor 5ss

42.7

-0.8

3.5

65.8

45.3

Minor BPS

36.3

-1.2

1.9

33.61

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016901

Chromosome:

PEDO01011258.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030970

21 - 1225

1205