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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011266.1_724_1245_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
724 - 1245
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTATTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
QEDQKPDEQEPDITSTPNFV
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
70.2
40.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.4
0.8
0.7
85.8
27.5
Minor 5ss
32.2
-2
3.7
45.9
49.3
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
C1QBP
Ensembl Gene ID:
ENSAPLG00000018889
Chromosome:
PEDO01011266.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036951
325 - 2563
2239