About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011301.1_1459_1938_R

Intron Information:

Intron Rank:
146591
Intron Class:
major
Intron Phase:
Intron Coordinates:
1459 - 1938
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026212
Chromosome:
PEDO01011301.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027718
1236 - 2539
1304
ENSAPLT00000018850
813 - 2539
1727
ENSAPLT00000018007
813 - 2539
1727