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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011306.1_1004_1530_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1004 - 1530
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTGCTGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
ACAACTTTACTT
Flanking Amino Acid:
DVTFPHMPCAYLSIDAMDVA
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
59.6
40.7
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
76.2
0.59
1
72.8
42.2
Minor 5ss
30.7
-2.2
2.9
38.1
40.9
Minor BPS
50.6
0.1
1.6
63.38
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030678
Chromosome:
PEDO01011306.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046431
21 - 1932
1912