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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011332.1_1054_1140_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1054 - 1140
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
CTCTGCTCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CTCTCGGCCATC
Flanking Amino Acid:
DWAVNGVGRKVSHHYGYGLL
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65.8
42.7
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
74.6
0.55
0.8
68.7
31.7
Minor 5ss
41.6
-0.9
3
47.2
48.2
Minor BPS
33.4
-1.3
2.7
45.19
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019273
Chromosome:
PEDO01011332.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020866
278 - 1262
985