Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011332.1_3815_3896_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3815 - 3896

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGGATG

5'SS Class:

major

3'SS Sequence:

ATCTCTCCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

CCATCCCCATCT

Flanking Amino Acid:

VPLLGQLCQADDVRTEAQQR

Intron Amino Acid Position:

321

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

69.9

42.1

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

70.6

0.46

0.8

62.8

33.8

Minor 5ss

30.9

-2.2

3.2

40.5

45.5

Minor BPS

44.8

-0.3

2.1

61.77

47.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030649

Chromosome:

PEDO01011332.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041622

421 - 5484

5064