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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011332.1_4207_4288_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4207 - 4288
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGTCC
5'SS Class:
major
3'SS Sequence:
CGTCCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTCCCCACGAGT
Flanking Amino Acid:
DVLDPKKKLIRRCLSQRDCL
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
65.4
34.8
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
73.5
0.53
0.8
65.9
30.1
Minor 5ss
32.6
-2
3.2
42.3
44.6
Minor BPS
41.9
-0.5
2
57.87
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030649
Chromosome:
PEDO01011332.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041622
421 - 5484
5064