Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011337.1_489_528_R

Intron Information:

Intron Rank:

146282

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

489 - 528

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-GT

5'SS Sequence:

CCG|GTGCGGCGG

5'SS Class:

major

3'SS Sequence:

TGCCCATCCCGGT|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCCCAT

U12 Branch Point Sequence:

GTCCCGGTGACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.5

0.3

1.1

42.8

45.8

Major BPS

57.1

0.18

1.4

66.4

42.2

Major PPT

-2.1

4.1

35.3

Minor 5ss

24.1

-3

3.2

29.5

43.3

Minor BPS

40.6

-0.8

2.6

48.58

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026056

Chromosome:

PEDO01011337.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017642

21 - 633

613