Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011395.1_802_1216_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

802 - 1216

Intron Length:

415

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GACTGAC

U12 Branch Point Sequence:

TGTGGACTGACT

Flanking Amino Acid:

KEMEDNGVDVVYLDGLKSRD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

69.6

41.1

Major BPS

55.9

0.15

1.2

Major PPT

90.7

0.92

0.7

88.9

28.1

Minor 5ss

35.5

-1.7

3.4

47.8

42.4

Minor BPS

42.5

-0.5

2.3

66.02

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019574

Chromosome:

PEDO01011395.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040758

502 - 2629

2128

ENSAPLT00000036650

502 - 2629

2128