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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011409.1_737_883_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
737 - 883
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CCCGGACCCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
CCTCCCGGACCC
Flanking Amino Acid:
CDSVSLCFSKGLGAPAGAVL
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
57.9
0.18
0.9
46.3
35.6
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
41.6
-0.6
2.3
52.11
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020332
Chromosome:
PEDO01011409.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038708
222 - 1908
1687