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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011411.1_3184_3352_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3184 - 3352
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAC
U12 Branch Point Sequence:
GGATGCCGAAGC
Flanking Amino Acid:
AGKYGSQCVHSCGNCKRSQP
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
52.3
0.06
1.4
64.2
43
Major PPT
69.1
0.43
1
62.2
39.8
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
38.7
-0.8
2.2
46.78
41.4

Associated Gene:

Gene:
SCARF1
Ensembl Gene ID:
ENSAPLG00000022358
Chromosome:
PEDO01011411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035563
1145 - 6866
5722