Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011411.1_3572_3679_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3572 - 3679

Intron Length:

108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCCCCC

5'SS Class:

major

3'SS Sequence:

TTTGTCTCGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

GGCACCCTGACA

Flanking Amino Acid:

LHCEPGWMGPSCNSSCPTGT

Intron Amino Acid Position:

342

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.8

0.33

1.3

51.8

45.5

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

76.9

0.6

73.8

36.9

Minor 5ss

43.6

-0.7

3.1

60.9

43.6

Minor BPS

49.2

-0

1.7

40.9

Associated Gene:

Gene:

SCARF1

Ensembl Gene ID:

ENSAPLG00000022358

Chromosome:

PEDO01011411.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035563

1145 - 6866

5722