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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011411.1_4411_4513_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4411 - 4513
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAG
U12 Branch Point Sequence:
CGGACCTCAGCT
Flanking Amino Acid:
LGGYKLPKVTVSHHDAEIPF
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
49.8
-0
1.5
59.3
39.1
Major PPT
78
0.63
0.7
69.8
31
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
47.6
-0.1
1.9
61.99
47.2

Associated Gene:

Gene:
SCARF1
Ensembl Gene ID:
ENSAPLG00000022358
Chromosome:
PEDO01011411.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035563
1145 - 6866
5722