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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011412.1_740_866_F

Intron Information:

Intron Rank:
149409
Intron Class:
major
Intron Phase:
Intron Coordinates:
740 - 866
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGACAG
5'SS Class:
major
3'SS Sequence:
CTCCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
AACTCCTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
62.5
43.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
71.6
0.49
0.7
65.2
23.5
Minor 5ss
26.7
-2.7
2.8
30.2
42.8
Minor BPS
65.7
0.47
1.6
69.89
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030387
Chromosome:
PEDO01011412.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035390
21 - 2114
2094