Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011419.1_1032_1118_R

Intron Information:

Intron Rank:

149416

Intron Class:

major

Intron Phase:

Intron Coordinates:

1032 - 1118

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTGCTTTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

GGCTAGCTAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

72.2

39.5

Major BPS

0.45

0.9

67.6

25.3

Major PPT

0.56

68.7

Minor 5ss

30.4

-2.2

3.2

31.9

42.5

Minor BPS

43.6

-0.4

2.4

63.42

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027894

Chromosome:

PEDO01011419.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033718

21 - 1976

1956

ENSAPLT00000031756

479 - 3335

2857