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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011419.1_394_519_R

Intron Information:

Intron Rank:
149421
Intron Class:
major
Intron Phase:
Intron Coordinates:
394 - 519
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
CTTGGTGTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
36.7
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
70.6
0.46
0.8
61.2
35.1
Minor 5ss
33
-1.9
3.3
46.8
48.5
Minor BPS
39.6
-0.7
2.6
62.23
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027894
Chromosome:
PEDO01011419.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033718
21 - 1976
1956