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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011432.1_2144_2759_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2144 - 2759
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTTTCTTACTG
Flanking Amino Acid:
LAPNGFGGVQVSPPNENIVI
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
85.4
31.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.1
0.61
0.9
70.5
34.5
Minor 5ss
37.6
-1.4
3.6
57.9
46.7
Minor BPS
64
0.3
1.6
68.91
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022524
Chromosome:
PEDO01011432.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045969
427 - 2927
2501