Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011432.1_775_1597_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

775 - 1597

Intron Length:

823

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTTCCTTTACA

Flanking Amino Acid:

EIQNYGDIYQVRDCRLSGLL

Intron Amino Acid Position:

172

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

0.8

84.7

26.5

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

87.6

0.85

0.7

83.3

25.1

Minor 5ss

44.1

-0.6

2.9

61.1

43.8

Minor BPS

83.6

1.05

1.4

91.85

28.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022524

Chromosome:

PEDO01011432.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045969

427 - 2927

2501