Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011452.1_166_314_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

166 - 314

Intron Length:

149

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCTGGGGCT

5'SS Class:

major

3'SS Sequence:

TTGCCACATTGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGCCAC

U12 Branch Point Sequence:

TTTGCCACATTG

Flanking Amino Acid:

EGLPMLHEPGPGAQRGQWV*

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.3

0.27

1.4

64.6

38.4

Major BPS

52.3

0.06

1.4

64.2

Major PPT

49.4

-0

1.7

59.6

Minor 5ss

16.1

-3.9

3.9

22.4

37.3

Minor BPS

44.1

-0.5

2.1

56.42

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023048

Chromosome:

PEDO01011452.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033927

136 - 1171

1036