Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011452.1_517_759_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

517 - 759

Intron Length:

243

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

GTGTTGTCCGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTGAG

U12 Branch Point Sequence:

ATTGAGGTCACT

Flanking Amino Acid:

TQEELIARFLQNPNLAEKYR

Intron Amino Acid Position:

127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

57.2

42.1

Major BPS

52.3

0.06

1.5

52.7

43.2

Major PPT

60.2

0.23

1.1

60.2

40.7

Minor 5ss

28.8

-2.4

3.1

36.7

41.6

Minor BPS

36.5

-0.9

2.9

62.6

47.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023048

Chromosome:

PEDO01011452.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033927

136 - 1171

1036