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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01011461.1_858_1262_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
858 - 1262
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTATATATC
5'SS Class:
weak_major
3'SS Sequence:
CCCCACCATGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGCCAC
U12 Branch Point Sequence:
CGCCCCCCACCA
Flanking Amino Acid:
MSTNGCQRPPDNAIIALH
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.1
64.2
40
Major BPS
47.8
-0.1
1.3
56.1
40.7
Major PPT
47.2
-0.1
1.6
50
32.7
Minor 5ss
47.7
-0.2
2.6
63.1
41.7
Minor BPS
40.2
-0.7
2
46.53
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021051
Chromosome:
PEDO01011461.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030531
564 - 1286
723